Biological Molecules & Enzymes

Your food is built from three main molecules, and your body relies on enzymes to break them down and build them up. Here is how to identify each one and how enzymes actually work.

MYP 4BiologyBiochemistry~10 min read

The three food molecules

Most of what you eat is made of three groups of large molecules, each built from smaller units.

MoleculeBuilt fromMain jobExample foods
CarbohydratesSimple sugars (like glucose)Fast energy supplyBread, rice, pasta, potatoes
Lipids (fats and oils)Fatty acids and glycerolEnergy store, insulationButter, oil, nuts
ProteinsAmino acidsGrowth and repair, enzymesMeat, fish, eggs, beans
Polymer
A large molecule made by joining many small repeating units together. Starch is a polymer of glucose; a protein is a polymer of amino acids.

Food tests

Each molecule has a chemical test that gives a colour change. Learn the reagent, the method and the positive result for each.

Test forReagentMethodPositive result
Reducing sugar (glucose)Benedict's solutionAdd and heat in a warm water bathBlue turns green, then yellow, then brick-red
StarchIodine solutionAdd a few drops at room temperatureOrange-brown turns blue-black
LipidEthanol (emulsion test)Mix with ethanol, then add waterA cloudy white emulsion forms
ProteinBiuret solutionAdd at room temperatureBlue turns purple (lilac)

Safety and accuracy

Benedict's test needs a water bath, not a naked flame, and ethanol is flammable, so keep it well away from heat. Always run a control with water so you can see what a negative result looks like.

Enzymes as biological catalysts

Chemical reactions in your body would be far too slow to keep you alive. Enzymes speed them up without being used up.

Enzyme
A protein that acts as a biological catalyst, speeding up a specific reaction without being changed or used up itself.

Each enzyme has a specially shaped dent called the active site. Only one kind of molecule, the substrate, fits into it, rather like a key fitting one lock. This is the lock-and-key model. When the substrate slots in, the enzyme holds it in just the right way to react, then releases the products and is free to do it again.

Worked example

Explain why the enzyme amylase breaks down starch but not protein.

1
Amylase has an active site with one particular shape.
2
Only starch has a shape that fits that active site (the correct "key").
3
Protein has a different shape, so it cannot enter the active site and is not broken down.
Enzymes are specific: each one only works on a substrate that fits its active site, so amylase acts on starch alone.

Effect of temperature and pH

Enzymes only work well in a narrow range of conditions. Picture a graph of reaction rate against temperature: the line climbs to a peak, then drops sharply.

As temperature rises, particles move faster and collide more often, so the rate climbs to a maximum at the optimum temperature (around 37°C in humans). Heat any further and the active site changes shape permanently. The substrate no longer fits and the rate crashes. This is denaturation, and it cannot be undone.

pH works the same way: the rate peaks at an optimum pH and falls off on either side. Stomach protease likes acidic conditions (about pH 2), while amylase in the mouth prefers a neutral pH of about 7. Too far from the optimum and the enzyme denatures again.

Denaturation
A permanent change to the shape of an enzyme's active site, caused by high temperature or the wrong pH, so the substrate no longer fits and the enzyme stops working.

Where this is assessed

Describing molecules and how enzymes work is Criterion A (knowing and understanding). Designing an enzyme experiment with a clear variable is Criterion B (inquiring and designing), and drawing the rate against temperature graph and explaining the peak is Criterion C (processing and evaluating).

Check yourself

1. Which test would you use for starch, and what is the positive result? +

Add iodine solution. If starch is present it turns from orange-brown to blue-black.

2. Why does an enzyme stop working at high temperature? +

Above the optimum, the heat changes the shape of the active site permanently. The substrate no longer fits, so the reaction stops. The enzyme has been denatured.

3. What does "an enzyme is specific" mean? +

It means each enzyme only speeds up one particular reaction, because only a substrate with the matching shape fits its active site (the lock-and-key model).


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